Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce3630WD-repeat protein. (1293 aa)    
Predicted Functional Partners:
sce5337
TPR repeat hypothetical protein.
  
 
  0.748
pp2c12
Phosphoprotein phosphatase; High confidence in function and specificity.
   
 0.748
sce3210
Hypothetical WD-repeat protein all2124.
  
     0.738
sce1279
Hypothetical protein.
 
     0.692
sce6745
Hypothetical protein; FOG: TPR repeat.
 
   
 0.679
sce1590
Hypothetical protein.
 
   
 0.650
sce0300
Hypothetical protein; Function unclear.
  
 
  0.645
sce4059
Putative membrane protein.
 
   
 0.636
sce0424
Hypothetical protein.
   
 
 0.631
sce6702
Hypothetical protein; FOG: TPR repeat.
 
 
 0.603
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.