STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce3653Hypothetical protein. (372 aa)    
Predicted Functional Partners:
sce6926
Hypothetical protein.
  
     0.775
sce2957
Hypothetical protein; FOG: Glucan-binding domain (YG repeat).
  
     0.774
sce3652
Hypothetical protein predicted by Glimmer/Critica.
       0.773
sce6447
Hypothetical protein; FOG: TPR repeat.
  
     0.773
sce7248
Putative MglB protein.
  
     0.767
sce5854
Putative type IV pilus assembly protein; Family membership.
  
     0.744
nikR
Putative transcriptional regulator, CopG family; Specificity unclear.
       0.741
sce1597
Hypothetical protein; FOG: HEAT repeat.
  
     0.714
sce4475
Hypothetical protein ZK84.1.
  
     0.714
sce8153
Hypothetical protein.
  
     0.674
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.