Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce3690Hypothetical protein. (216 aa)    
Predicted Functional Partners:
galE2
GalE2 protein; High confidence in function and specificity.
       0.792
sce7690
Hypothetical protein.
  
     0.646
sce0703
Hypothetical protein.
  
     0.623
sce2548
Hypothetical protein.
  
     0.607
sce3692
Probable glutathione S-transferase; High confidence in function and specificity.
       0.596
sce2836
Putative membrane protein.
  
     0.586
sce6145
HTH luxR-type domain-containing protein; Unnamed protein product; Family membership.
  
     0.579
sce0609
Hypothetical protein; FOG: TPR repeat.
  
     0.554
sce6521
Posible heat shock protein.
  
     0.552
sce4039
Hypothetical protein.
  
     0.551
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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