Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
sce3695Putative ABC transport system permease protein. (296 aa)    
Predicted Functional Partners:
sce3697
ABC transporter ATP-binding protein; Family membership.
 
 0.989
sce3963
Putative ABC transport system ATP-binding protein; Family membership.
 
 0.989
sce4479
Putative ABC transport system ATP-binding protein.
 
 0.989
sce3139
Putative ABC transporter, ATP-binding protein.
 
 0.988
sce3698
Putative ABC-type organic solvent resistance transport system substrate-binding protein.
 
 0.987
sce7646
ABC-type organic solvent transporter, solute-binding periplasmic protein.
 
 0.984
sce4478
Putative ABC transport system substrate-binding protein.
 
 0.979
sce3696
Putative ABC transport system permease protein.
 
  
 
0.874
sce6248
Hypothetical protein; ABC-type transport system involved in resistance to organic solvents auxiliary component.
  
 
 0.859
sce4450
Probable surface antigen.
 
     0.686
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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