STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce3718Phytoene dehydrogenase; High confidence in function and specificity. (521 aa)    
Predicted Functional Partners:
crtB
Phytoene synthase; Family membership.
 
  
 0.682
crtI2
Putative Phytoene dehydrogenase; Family membership.
  
     0.635
sce0430
Unnamed protein product.
  
  
 0.507
crtC
Hydroxyneurosporene dehydrogenase; Family membership.
 
  
 0.497
crtE
Farnesyltranstransferase; Family membership; Belongs to the FPP/GGPP synthase family.
 
  
 0.455
sce3299
Latent transforming growth factor beta binding protein.
  
     0.454
sce4410
Hypothetical protein.
  
     0.439
sce6350
Vitelline membrane outer layer protein I-like Hypothetical protein.
  
     0.434
sce3717
Hypothetical protein.
       0.425
sce5505
Acid phosphatase 5, tartrate resistant; Family membership.
  
     0.404
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.