Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce3719Nucleotidyl transferase. (300 aa)    
Predicted Functional Partners:
algC
AlgC protein; High confidence in function and specificity.
 
 
 0.948
sce4837
Put. Phosphoglucomutase/Phosphomannomutase; Specificity unclear.
  
 
 0.932
manAC
Mannose-6-phosphate isomerase / mannose-1-phosphate guanylyltransferase; High confidence in function and specificity.
  
 
 0.931
sce4868
Hexose-1-phosphate nucleotidyltransferase; High confidence in function and specificity.
 
  
  0.923
galE3
UDP-glucose 4-epimerase; High confidence in function and specificity.
 
 0.873
galE4
GalE4 protein; High confidence in function and specificity.
 
 0.868
galE2
GalE2 protein; High confidence in function and specificity.
 
 0.865
rkpK
Hypothetical protein; Predicted UDP-glucose 6-dehydrogenase.
  
 
 0.847
galE1
UDP-glucose 4-epimerase; High confidence in function and specificity; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
  
 
 0.843
sce4259
Hypothetical protein.
  
 0.842
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.