Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce3722Probable restriction endonuclease. (138 aa)    
Predicted Functional Partners:
sce4360
Protein of unknown function.
  
     0.741
sce2003
Uncharacterized protein conserved in cyanobacteria.
  
     0.685
sce0260
Uncharacterized protein conserved in cyanobacteria.
  
     0.668
sce6812
Hypothetical protein.
  
     0.625
sce7168
Hypothetical protein.
  
     0.618
sce2332
Hypothetical protein.
  
     0.596
sce3540
Uncharacterized protein conserved in cyanobacteria.
  
     0.596
sce6811
DNA repair protein; Family membership.
 
   
 0.594
sce5012
Hypothetical protein.
  
     0.575
sce1131
Predicted nucleic acid-binding protein contains PIN domain.
  
     0.554
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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