Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce3745Sugar phosphate nucleotidyltransferase; Family membership. (248 aa)    
Predicted Functional Partners:
sce8514
Hypothetical protein; Predicted phosphotransferase related to Ser/Thr protein kinases.
 
 
 0.945
sce3746
Sugar kinase; Family membership.
 
   
 0.915
murB
UDP-N-acetylmuramate dehydrogenase; Cell wall formation.
    
 0.906
sce3748
Sugar phosphatase; Specificity unclear.
 
 0.879
murA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
    
 0.827
gmhA
Sedoheptulose 7-phosphate isomerase; High confidence in function and specificity.
 
  
 0.794
galE2
GalE2 protein; High confidence in function and specificity.
 
 
 0.711
sce4869
NDP-hexose 4,6-dehydratase; High confidence in function and specificity.
 
 
 0.691
galE5
GalE5 protein; High confidence in function and specificity.
 
  
 0.647
sce3055
Hypothetical protein with NDP-sugar oxidoreductase domain; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family.
  
  
 0.616
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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