Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
clpB1Chaperone clpB. (333 aa)    
Predicted Functional Partners:
sce2588
Hypothetical protein; Function unclear.
 
     0.790
sce6514
Uncharacterized protein conserved in bacteria.
 
    0.763
gmhA
Sedoheptulose 7-phosphate isomerase; High confidence in function and specificity.
  
    0.567
sce3748
Sugar phosphatase; Specificity unclear.
       0.556
sce5736
AMP-dependent synthetase and ligase.
  
     0.464
sce3745
Sugar phosphate nucleotidyltransferase; Family membership.
       0.428
sce3746
Sugar kinase; Family membership.
       0.428
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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