Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ntcA | rpoA | sce3757 | sce7936 | Global nitrogen regulatory protein, CRP family of transcriptional regulators. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.402 |
| ntcA | rpoB | sce3757 | sce0410 | Global nitrogen regulatory protein, CRP family of transcriptional regulators. | DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.424 |
| ntcA | sce2073 | sce3757 | sce2073 | Global nitrogen regulatory protein, CRP family of transcriptional regulators. | Putative membrane protein. | 0.692 |
| ntcA | sce2782 | sce3757 | sce2782 | Global nitrogen regulatory protein, CRP family of transcriptional regulators. | cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases. | 0.765 |
| ntcA | sce3758 | sce3757 | sce3758 | Global nitrogen regulatory protein, CRP family of transcriptional regulators. | Myrcene/ocimene synthase, putative. | 0.485 |
| ntcA | sce4318 | sce3757 | sce4318 | Global nitrogen regulatory protein, CRP family of transcriptional regulators. | cAMP-binding protein Probable transcriptional regulatory protein; Specificity unclear. | 0.706 |
| ntcA | sce7196 | sce3757 | sce7196 | Global nitrogen regulatory protein, CRP family of transcriptional regulators. | cAMP binding protein. | 0.485 |
| ntcA | sce8187 | sce3757 | sce8187 | Global nitrogen regulatory protein, CRP family of transcriptional regulators. | cAMP-dependent protein kinase regulatory subunit; Family membership. | 0.688 |
| rpoA | ntcA | sce7936 | sce3757 | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Global nitrogen regulatory protein, CRP family of transcriptional regulators. | 0.402 |
| rpoA | rpoB | sce7936 | sce0410 | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
| rpoA | sce2073 | sce7936 | sce2073 | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Putative membrane protein. | 0.402 |
| rpoA | sce2782 | sce7936 | sce2782 | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases. | 0.402 |
| rpoA | sce4318 | sce7936 | sce4318 | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | cAMP-binding protein Probable transcriptional regulatory protein; Specificity unclear. | 0.402 |
| rpoA | sce7196 | sce7936 | sce7196 | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | cAMP binding protein. | 0.402 |
| rpoA | sce8187 | sce7936 | sce8187 | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | cAMP-dependent protein kinase regulatory subunit; Family membership. | 0.892 |
| rpoB | ntcA | sce0410 | sce3757 | DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Global nitrogen regulatory protein, CRP family of transcriptional regulators. | 0.424 |
| rpoB | rpoA | sce0410 | sce7936 | DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
| rpoB | sce2073 | sce0410 | sce2073 | DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Putative membrane protein. | 0.445 |
| rpoB | sce2782 | sce0410 | sce2782 | DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases. | 0.424 |
| rpoB | sce4318 | sce0410 | sce4318 | DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | cAMP-binding protein Probable transcriptional regulatory protein; Specificity unclear. | 0.424 |
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