Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yloCUncharacterized stress-induced protein. (292 aa)    
Predicted Functional Partners:
gmk
Putative Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
  
    0.949
gltB1
Glutamate synthase (NADPH); High confidence in function and specificity.
  
    0.825
sce9228
Inositol monophosphatase family protein; Family membership.
 
 
    0.781
mtaP
5'-methyl-5-thioadenosine phosphorylase; Catalyzes the reversible phosphorylation of S-methyl-5'- thioadenosine (MTA) to adenine and 5-methylthioribose-1-phosphate. Involved in the breakdown of MTA, a major by-product of polyamine biosynthesis. Responsible for the first step in the methionine salvage pathway after MTA has been generated from S-adenosylmethionine. Has broad substrate specificity with 6-aminopurine nucleosides as preferred substrates; Belongs to the PNP/MTAP phosphorylase family. MTAP subfamily.
       0.771
galE3
UDP-glucose 4-epimerase; High confidence in function and specificity.
       0.718
sce3759
Hypothetical protein.
       0.649
rpoZ
Putative DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
  
 0.627
sce3764
Carbohydrate kinase, PfkB family; Specificity unclear.
       0.467
sun
Sun protein; Family membership; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
 
     0.460
sce3758
Myrcene/ocimene synthase, putative.
       0.440
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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