Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
sce3770Putative Phytoene dehydrogenase-related protein. (504 aa)    
Predicted Functional Partners:
crtB
Phytoene synthase; Family membership.
 
  
 0.792
sce3769
Putative L-asparaginase; Family membership.
       0.727
sce4533
Hypothetical protein predicted by Glimmer/Critica.
  
     0.647
crtC
Hydroxyneurosporene dehydrogenase; Family membership.
 
  
 0.575
sce0430
Unnamed protein product.
  
  
 0.507
proS
Proline--tRNA ligase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro).
       0.503
crtE
Farnesyltranstransferase; Family membership; Belongs to the FPP/GGPP synthase family.
 
  
 0.444
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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