STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prkA1Protein kinase; Family membership. (800 aa)    
Predicted Functional Partners:
sce1772
Uncharacterized conserved protein involved in stress response; Function unclear; Belongs to the UPF0229 family.
 
  
 0.975
spoVR
Stage V sporulation protein R; High confidence in function and specificity.
 
  
 0.975
otsA
Alpha,alpha-trehalose-phosphate synthase (UDP-forming); High confidence in function and specificity.
   
    0.845
sce3268
Alpha,alpha-trehalose-phosphate synthase (UDP-forming); Family membership.
   
    0.845
sce3778
Putative deoxyribonuclease, TatD family; High confidence in function and specificity.
       0.773
dkgB
Putative 2,5-didehydrogluconate reductase; Family membership.
   
    0.746
sce5854
Putative type IV pilus assembly protein; Family membership.
  
     0.721
sce5957
DNA helicase; Unnamed protein product; Hypothetical protein.
  
     0.716
sce3780
Putative secreted protein.
       0.701
sce4311
5'-nucleotidase; Family membership.
  
     0.684
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.