STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce3787Hypothetical protein; NTP pyrophosphohydrolases including oxidative damage repair enzymes. (277 aa)    
Predicted Functional Partners:
sce3788
Response regulatory domain-containing protein; Unnamed protein product; Family membership.
       0.778
sce3726
Hypothetical protein.
  
     0.644
sce5953
Probable anion transporter ATPase; Function unclear.
  
   
 0.585
sce7106
Metallo-beta-lactamase family protein; Family membership.
  
     0.579
sce2588
Hypothetical protein; Function unclear.
  
     0.543
galE4
GalE4 protein; High confidence in function and specificity.
  
     0.497
sce6439
Uncharacterized protein conserved in bacteria.
  
    0.474
sce2893
Putative short-chain dehydrogenases; Family membership; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
   0.469
sce8922
APH domain-containing protein; Unnamed protein product; Family membership.
  
     0.458
sce8732
Hypothetical protein predicted by Glimmer/Critica.
 
  
 0.434
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.