STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pp2c9Phosphoprotein phosphatase; High confidence in function and specificity. (411 aa)    
Predicted Functional Partners:
sce3794
Hypothetical protein predicted by Glimmer/Critica.
       0.605
sce3955
Protein kinase; Family membership.
  
   0.508
sce3428
Protein kinase; Family membership.
  
   0.491
sce3793
Sigma-54 dependent transcriptional regulator; Family membership.
       0.432
sce6373
methionyl-tRNA formyltransferase; Family membership.
  
   0.412
sun
Sun protein; Family membership; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
  
    0.408
fmt1
Methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
  
   0.401
sce7341
Hypothetical protein predicted by Glimmer/Critica.
  
   0.401
fmt2
Fmt2 protein; Family membership.
  
   0.401
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.