Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
fadD1Putative Long-chain-fatty-acid-CoA ligase. (529 aa)    
Predicted Functional Partners:
sce8261
Polyketide synthase type I; Family membership.
 
 0.957
acpP4
Putative acyl carrier protein.
 
   0.908
sce3190
Polyketide synthase; Family membership.
  
 0.891
asnB2
AsnB2 protein; High confidence in function and specificity.
 
   
 0.873
sce3192
Polyketide synthase; Family membership.
  
 0.844
sce0819
Polyketide synthase; Family membership.
  
 0.836
sce6823
NRPS/PKS hybrid.
  
 0.680
nadE
NAD(+) synthase (glutamine-hydrolyzing); Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source; Belongs to the NAD synthetase family.
 
     0.655
sce0345
NRPS/PKS hybrid; Family membership.
  
 0.592
sce0820
Polyketide synthase; Family membership; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
  
 0.576
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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