Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce3832Procollagen, type XI, alpha. (331 aa)    
Predicted Functional Partners:
sce6823
NRPS/PKS hybrid.
  
    0.804
mxcF
Isochorismatase; High confidence in function and specificity.
  
    0.772
sce2445
Hypothetical protein predicted by Glimmer/Critica.
  
     0.742
sce1844
Hypothetical protein predicted by Glimmer/Critica.
  
     0.738
sce6350
Vitelline membrane outer layer protein I-like Hypothetical protein.
  
     0.721
sce8651
Outer membrane protein, putative.
  
     0.712
sce3299
Latent transforming growth factor beta binding protein.
  
     0.709
sce3873
WD-repeat protein.
  
     0.707
sce1566
Hypothetical protein predicted by Glimmer/Critica.
  
     0.682
sce4406
Putative secreted protein.
  
 
   0.673
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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