STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce3841AAA ATPases; Family membership. (387 aa)    
Predicted Functional Partners:
sce7892
Hypothetical protein.
  
     0.542
sce5904
Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain).
 
  
 0.531
sce2494
Hypothetical protein predicted by Glimmer/Critica.
  
     0.517
sce0785
PE-PGRS family protein.
  
     0.481
sce7747
Putative protein phosphatase.
  
     0.481
sce0520
Unknown protein.
  
     0.477
sce2921
Tetratricopeptide repeat protein.
 
     0.455
sce2920
Tetratricopeptide repeat protein.
  
     0.449
sce0474
Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain).
 
  
 0.414
sce9166
Hypothetical protein.
  
    0.412
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.