Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| atpA | mltD2 | sce9361 | sce3852 | H(+)-transporting two-sector ATPase; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family. | Membrane-bound lytic murein transglycosylase D. | 0.658 |
| atpA | nuoD1 | sce9361 | sce0525 | H(+)-transporting two-sector ATPase; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family. | NADH dehydrogenase (ubiquinone); NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family. | 0.890 |
| atpA | nuoE | sce9361 | sce4224 | H(+)-transporting two-sector ATPase; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family. | NADH dehydrogenase (ubiquinone); High confidence in function and specificity. | 0.859 |
| atpA | nuoF | sce9361 | sce4223 | H(+)-transporting two-sector ATPase; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family. | NADH dehydrogenase (ubiquinone); High confidence in function and specificity. | 0.860 |
| atpA | nuoG | sce9361 | sce0526 | H(+)-transporting two-sector ATPase; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family. | NADH dehydrogenase (ubiquinone); Family membership. | 0.877 |
| atpA | petB | sce9361 | sce0365 | H(+)-transporting two-sector ATPase; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family. | Cytochrome b6. | 0.544 |
| atpA | sce2646 | sce9361 | sce2646 | H(+)-transporting two-sector ATPase; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family. | Oxidoreductase; Specificity unclear. | 0.921 |
| atpA | sce7592 | sce9361 | sce7592 | H(+)-transporting two-sector ATPase; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family. | Putative Cytochrome-c oxidase; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B). | 0.550 |
| mltD2 | atpA | sce3852 | sce9361 | Membrane-bound lytic murein transglycosylase D. | H(+)-transporting two-sector ATPase; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family. | 0.658 |
| mltD2 | nuoD1 | sce3852 | sce0525 | Membrane-bound lytic murein transglycosylase D. | NADH dehydrogenase (ubiquinone); NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family. | 0.621 |
| mltD2 | nuoE | sce3852 | sce4224 | Membrane-bound lytic murein transglycosylase D. | NADH dehydrogenase (ubiquinone); High confidence in function and specificity. | 0.824 |
| mltD2 | nuoF | sce3852 | sce4223 | Membrane-bound lytic murein transglycosylase D. | NADH dehydrogenase (ubiquinone); High confidence in function and specificity. | 0.856 |
| mltD2 | nuoG | sce3852 | sce0526 | Membrane-bound lytic murein transglycosylase D. | NADH dehydrogenase (ubiquinone); Family membership. | 0.925 |
| mltD2 | petB | sce3852 | sce0365 | Membrane-bound lytic murein transglycosylase D. | Cytochrome b6. | 0.832 |
| mltD2 | sce2387 | sce3852 | sce2387 | Membrane-bound lytic murein transglycosylase D. | Non-ribosomal peptide synthetase; Family membership. | 0.784 |
| mltD2 | sce2646 | sce3852 | sce2646 | Membrane-bound lytic murein transglycosylase D. | Oxidoreductase; Specificity unclear. | 0.930 |
| mltD2 | sce7592 | sce3852 | sce7592 | Membrane-bound lytic murein transglycosylase D. | Putative Cytochrome-c oxidase; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B). | 0.938 |
| mltD2 | sce8262 | sce3852 | sce8262 | Membrane-bound lytic murein transglycosylase D. | Non-ribosomal peptide synthetase; Family membership. | 0.781 |
| nuoD1 | atpA | sce0525 | sce9361 | NADH dehydrogenase (ubiquinone); NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family. | H(+)-transporting two-sector ATPase; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family. | 0.890 |
| nuoD1 | mltD2 | sce0525 | sce3852 | NADH dehydrogenase (ubiquinone); NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family. | Membrane-bound lytic murein transglycosylase D. | 0.621 |
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