Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
sce3878Putative outer membrane protein. (676 aa)    
Predicted Functional Partners:
tonB1
Putative TonB protein; Specificity unclear.
   
 
 0.788
tonB2
Putative TonB protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
   
 
 0.788
sce3877
Putative secreted protein.
       0.776
sce8263
tonB family protein; Family membership.
 
 
 
 0.766
sce4140
TonB dependent receptor; Family membership.
 
   
 0.741
sce3259
Periplasmic protein TonB links inner and outer membranes.
 
 
 
 0.523
sce2057
Putative sphingosine kinase enzyme; High confidence in function and specificity.
  
     0.511
sce3343
Hypothetical protein AQ_1349.
  
     0.497
sce5360
Uncharacterized protein containing a von Willebrand factor type A (vWA) domain.
 
 
 
 0.489
sce2511
Hypothetical protein.
 
 
 
 0.487
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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