Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mxcHProbable TonB-dependent receptor; Family membership. (875 aa)    
Predicted Functional Partners:
sce7062
TonB-dependent receptor; Specificity unclear.
 
 
0.894
sce2511
Hypothetical protein.
 
 
0.872
sce8263
tonB family protein; Family membership.
  
 
 0.871
sce3259
Periplasmic protein TonB links inner and outer membranes.
 
 
0.869
mxcI
Hypothetical protein.
  
   0.718
sce3884
Hypothetical protein predicted by Glimmer/Critica.
     
 0.650
sce5274
Hypothetical protein.
  
   
 0.635
sce5370
Fibronectin type III domain protein.
  
     0.626
aglR1
Adventurous gliding motility protein R; Family membership.
 
 
 0.617
sce1098
Hypothetical protein predicted by Glimmer/Critica.
 
   
 0.612
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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