STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
betCCholine sulfatase; High confidence in function and specificity. (470 aa)    
Predicted Functional Partners:
atsA
Arylsulfatase (aryl-sulfate sulphohydrolase); High confidence in function and specificity.
 
     0.702
sce8140
Hypothetical protein predicted by Glimmer/Critica.
  
     0.701
chdh
Choline dehydrogenase; Family membership.
 
  
 0.679
sce5586
Putative membrane protein.
  
 
   0.598
sce8780
Putative secreted protein.
  
 
   0.555
glgC1
Glucose-1-phosphate adenylyltransferase; High confidence in function and specificity; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.
   
    0.546
glgC2
Glucose-1-phosphate adenylyltransferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.
   
    0.546
sce5593
DUF323 domain conserved hypothetical protein.
  
 
   0.532
sce3928
Hypothetical protein predicted by Glimmer/Critica.
       0.494
sce5590
Hypothetical protein.
  
 
   0.493
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.