Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce3938Hypothetical protein. (163 aa)    
Predicted Functional Partners:
sce3937
Hypothetical protein predicted by Glimmer/Critica.
       0.781
sce3291
Biotin/lipoyl attachment domain; Family membership.
  
     0.625
atpF2
H(+)-transporting two-sector ATPase; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.
  
     0.600
sce9314
Putative general secretion pathway protein C; Function unclear.
  
     0.584
sce6926
Hypothetical protein.
  
     0.574
sce6447
Hypothetical protein; FOG: TPR repeat.
  
     0.551
gspC2
General secretion pathway protein C fragment; Family membership.
  
     0.532
sce1597
Hypothetical protein; FOG: HEAT repeat.
  
     0.519
sce0364
Putative general secretion pathway protein C; Family membership.
  
     0.505
rpsT
30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.
  
     0.504
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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