Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce3951Hypothetical protein predicted by Glimmer/Critica. (212 aa)    
Predicted Functional Partners:
sce3478
Fatty acid desaturase; Specificity unclear.
 
  
 0.585
sce3710
Sensory box/GGDEF family protein.
   
    0.534
sce7197
Hypothetical protein.
 
     0.528
glnA1
GlnA1 protein; Family membership; Belongs to the glutamine synthetase family.
     
 0.454
sce2779
mutT/nudix family protein.
  
  
 0.452
gbd
Alcohol dehydrogenase.
       0.445
sce3181
Probable Hydroxymethylglutaryl-CoA synthase.
   
  
 0.421
sce6394
Putative Hydroxymethylglutaryl-CoA synthase.
   
  
 0.421
sce4636
Hypothetical protein predicted by Glimmer/Critica; Specificity unclear.
  
 
 0.411
sce7025
Putative nuclease; Specificity unclear.
   
    0.402
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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