Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
gbdAlcohol dehydrogenase. (384 aa)    
Predicted Functional Partners:
glnA1
GlnA1 protein; Family membership; Belongs to the glutamine synthetase family.
 
   
 0.886
adh2
Class III alcohol dehydrogenase; High confidence in function and specificity; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.
    
 
 0.783
yahK
Alcohol dehydrogenase; High confidence in function and specificity.
  
 
 0.740
adh5
Alcohol dehydrogenase; High confidence in function and specificity.
  
 
 0.740
pflA2
Pyruvate formate-lyase activating enzyme.
  
  
 0.651
glgA
Put. Glycogen synthase; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
   
    0.607
glgA2
Glycogen synthase; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
   
    0.607
gap
Glyceraldehyde-3-phosphate dehydrogenase (phosphorylating); High confidence in function and specificity; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
 
  
 0.533
sce3954
Hypothetical protein predicted by Glimmer/Critica.
       0.518
sce3955
Protein kinase; Family membership.
       0.518
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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