Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
glnA1GlnA1 protein; Family membership; Belongs to the glutamine synthetase family. (453 aa)    
Predicted Functional Partners:
gltB1
Glutamate synthase (NADPH); High confidence in function and specificity.
  
 
 0.960
gdhA1
Glutamate dehydrogenase; Family membership; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
  
 
 0.934
gdhA2
Glutamate dehydrogenase; Family membership; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
  
 
 0.934
glmS
Glucosamine--fructose-6-phosphate aminotransferase (isomerizing); Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
 
 
 0.934
gdhA3
Glutamate dehydrogenase (NADP(+)); High confidence in function and specificity; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
  
 
 0.934
carA1
Carbamoyl-phosphate synthase; Family membership.
  
 0.930
carA2
Carbamoyl-phosphate synthase; Family membership; Belongs to the CarA family.
  
 
 0.928
glnA2
Glutamate--ammonia ligase; High confidence in function and specificity.
  
  
 
0.926
sce8215
Put. Sugar isomerase domain containing protein; Family membership.
  
 
 0.924
gltD
Glutamate synthase (NADPH); High confidence in function and specificity.
  
 
 0.923
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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