Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce3964Hypothetical protein predicted by Glimmer/Critica. (274 aa)    
Predicted Functional Partners:
sce5923
Carrier domain-containing protein; Unnamed protein product; Family membership.
 
   
 0.784
sce3352
Hypothetical protein predicted by Glimmer/Critica.
 
   
 0.778
sce7401
Hypothetical protein predicted by Glimmer/Critica.
 
     0.761
sce7303
Putative Dehyrogenase; Family membership.
  
     0.730
sce6990
Hypothetical protein.
  
     0.729
sce1167
Putative Methyltransferase; Family membership.
 
     0.679
sce6989
Glycosyltransferase; Family membership.
 
   
 0.649
sce6992
Hypothetical protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
 
   
 0.620
sce7413
Putative membrane protein.
 
     0.619
sce6181
Electron-transferring-flavoprotein dehydrogenase; Family membership.
  
     0.573
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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