Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce4001Hypothetical protein. (394 aa)    
Predicted Functional Partners:
sce8261
Polyketide synthase type I; Family membership.
 
    0.741
sce4164
Hypothetical protein; Acyl-CoA dehydrogenases.
  
     0.718
sce4852
Hypothetical protein; Acyl-CoA dehydrogenases.
  
     0.554
sce0600
Putative hydroxylase.
  
     0.528
sce1884
Hypothetical protein; Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases large terminal subunit.
  
     0.528
sce2876
Putative hydroxylase.
  
     0.491
sce4002
Hypothetical protein; SAM-dependent methyltransferases.
       0.483
sce6004
Hypothetical protein; Hydrolases of the alpha/beta superfamily.
  
     0.483
sce5021
Putative Hydrolase; Family membership.
  
     0.458
sce7481
Putative secreted esterase; Family membership.
  
     0.451
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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