STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce4006Bacterial type 3a, cellulose-binding domain; Family membership. (743 aa)    
Predicted Functional Partners:
sce4008
Hypothetical protein.
  
     0.740
sce0152
Polynucleotide adenyltransferase.
  
     0.712
sce2743
Putative secreted protein.
  
     0.678
sce1559
Putative secreted protein.
  
     0.652
sce4005
Glycosyl hydrolases family 11 member; Family membership; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
 
 
   0.630
sce1440
Putative terpene cyclase; Family membership.
  
     0.611
sce4007
Sigma-54 dependent transcriptional regulator; Family membership.
  
    0.580
sce6726
Putative exported protein with lectin-like C-terminus.
  
 
   0.580
sce0738
Cupin-like protein.
  
     0.561
abfB
Alpha-L-arabinofuranosidase precursor; High confidence in function and specificity.
  
     0.557
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.