STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce4013Probable cation-transporting ATPase. (820 aa)    
Predicted Functional Partners:
sodC
Superoxide dismutase, secreted; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.
   
 0.965
copF
Cation-transporting ATPase; High confidence in function and specificity.
  
 
 0.810
sce1254
Cation-transporting ATPase; Family membership.
 
 
0.809
sce0006
Cation-translocating P-type ATPase; Family membership.
 
 
0.806
sce8083
Putative copper chaperone; Specificity unclear.
 
 
 0.783
sce6610
Transcriptional repressor CopY.
  
  
 0.765
sce7486
Unnamed protein product; Family membership.
  
  
 0.765
sce7664
Putative Heavy metal transport/detoxification protein; Family membership.
  
 
 0.754
sce4325
Putative peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
 
   0.680
trxA1
Thioredoxin.
 
  
 0.675
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.