STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbsA1Ribose transport ATP-binding protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family. (508 aa)    
Predicted Functional Partners:
rbsB1
Ribose transporter, periplasmic binding protein; High confidence in function and specificity.
 
 0.992
rbsC2
Ribose transport system permease protein; High confidence in function and specificity; Belongs to the binding-protein-dependent transport system permease family.
 
 0.990
rbsC4
Ribose ABC transporter permease protein; Specificity unclear; Belongs to the binding-protein-dependent transport system permease family.
 0.987
sce3100
Sugar transport system permease; Specificity unclear; Belongs to the binding-protein-dependent transport system permease family.
 0.983
sce3324
Transport system permease protein; Specificity unclear; Belongs to the binding-protein-dependent transport system permease family.
 0.980
rbsC3
Ribose ABC transporter permease protein; Specificity unclear; Belongs to the binding-protein-dependent transport system permease family.
 
 0.977
sce2222
Sugar ABC transport system permease protein; Specificity unclear; Belongs to the binding-protein-dependent transport system permease family.
 
 0.889
sce2223
Put. Sugar transport system permease; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.885
sce3305
Put. Sugar transport system permease; Family membership; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.856
sce3322
Put. D-ribose-binding periplasmic protein; Specificity unclear.
 
 
 0.843
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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