STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rbsB1Ribose transporter, periplasmic binding protein; High confidence in function and specificity. (340 aa)    
Predicted Functional Partners:
rbsA1
Ribose transport ATP-binding protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 
 0.992
rbsB2
Ribose transporter, periplasmic binding protein; High confidence in function and specificity.
  
  
  0.972
sce1402
Sugar-binding protein; Specificity unclear.
 
  
  0.963
sce3365
Putative sugar ABC transporter.
  
  
 
0.929
rbsC2
Ribose transport system permease protein; High confidence in function and specificity; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.929
sce3322
Put. D-ribose-binding periplasmic protein; Specificity unclear.
  
  
 
0.927
sce3102
ABC-type sugar transport system, periplasmic component; Specificity unclear.
  
  
 
0.914
sce3100
Sugar transport system permease; Specificity unclear; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.880
rbsC3
Ribose ABC transporter permease protein; Specificity unclear; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.880
rbsC4
Ribose ABC transporter permease protein; Specificity unclear; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.880
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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