STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce4056Hypothetical protein. (286 aa)    
Predicted Functional Partners:
sce4054
Protein kinase; Family membership.
  
    0.776
sce4055
Hypothetical protein predicted by Glimmer/Critica.
       0.773
sce3783
Cell wall surface anchor family protein.
  
     0.757
sce9090
Putative secreted protein.
  
     0.750
sce4313
Hypothetical protein.
  
     0.740
sce5004
Hypothetical protein.
  
     0.737
sce3784
Hypothetical protein.
  
     0.727
sce4694
Hypothetical protein.
  
     0.726
sce5259
Hypothetical protein predicted by Glimmer/Critica.
  
     0.716
sce1095
Putative secreted protein.
  
     0.715
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.