STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
uxuAMannonate dehydratase; Catalyzes the dehydration of D-mannonate; Belongs to the mannonate dehydratase family. (357 aa)    
Predicted Functional Partners:
sce1245
Altronate dehydratase.
 
 
 0.980
sce1243
Put. Tagaturonate reductase; Family membership.
 
 
 0.932
sce5155
Put. 2-Dehydro-3-deoxygluconokinase; Family membership.
 
  
 0.907
sce1240
Carbohydrate kinase, pfkB family; Family membership.
 
  
 0.906
sce5158
Hypothetical protein.
  
  
 0.848
rpiA
Ribose-5-phosphate isomerase; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
     
 0.832
gnd1
Phosphogluconate dehydrogenase; High confidence in function and specificity.
    
 0.828
rpe
Ribulose-phosphate 3-epimerase; Family membership; Belongs to the ribulose-phosphate 3-epimerase family.
     
 0.808
gnd2
Phosphogluconate dehydrogenase (decarboxylating); Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.
     
 0.803
kdgA2
KDPG and KHG aldolase; High confidence in function and specificity.
 
   
 0.754
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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