STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce4101Put. Polysaccharide deacetylase; Family membership. (325 aa)    
Predicted Functional Partners:
sce5430
Hypothetical protein predicted by Glimmer/Critica.
  
     0.612
sce7286
Put. Polysaccharide deacetylase; Family membership.
 
     0.562
sce0862
Glycosyltransferase; Function unclear.
 
  
 0.545
sce4100
Probable secreted esterase.
       0.517
sce0244
Hypothetical protein; Kef-type K+ transport systems predicted NAD-binding component.
  
     0.507
sce1548
Glycosyltransferase; Specificity unclear.
  
  
 0.486
ugcG
Ceramide glucosyltransferase; High confidence in function and specificity.
  
  
 0.486
sce2214
Putative hydrolase, alpha/beta hydrolase superfamily; Family membership.
  
     0.462
sce9122
Putative binding-protein-dependent transport protein; Family membership.
  
    0.452
sce7916
Hypothetical protein; Family membership.
  
     0.420
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.