STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce4103ABC transporter, periplasmic substrate-binding protein; Family membership. (370 aa)    
Predicted Functional Partners:
sce4768
ABC-type transporter, ATP-binding protein; Specificity unclear.
 
 0.848
sce4769
ABC-type transporter, permease protein; Specificity unclear.
 
 0.846
tauD2
TauD2 protein; High confidence in function and specificity.
 
    0.733
tauD1
Putative Taurine dioxygenase; Family membership.
 
    0.625
tauD3
Taurine dioxygenase; Family membership.
 
    0.606
sce3039
Unnamed protein product; Specificity unclear.
 
     0.577
sce2759
ABC transporter ATP-binding protein; Specificity unclear.
 
 
 0.576
sce2758
Putative ABC transporter permease protein; Family membership.
 
 
 0.573
sce1324
ABC transporter ATP-binding protein; Specificity unclear.
 
 
 0.571
sce3378
ABC transporter permease protein.
 
 
 0.551
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.