Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce4140TonB dependent receptor; Family membership. (632 aa)    
Predicted Functional Partners:
sce4141
Hypothetical protein predicted by Glimmer/Critica.
       0.813
sce1399
Hypothetical protein.
  
     0.770
sce1347
Putative outer membrane protein.
  
     0.744
sce3878
Putative outer membrane protein.
 
   
 0.741
sce6823
NRPS/PKS hybrid.
  
  
 0.725
bhuU
Putative hemin permease; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.707
tonB2
Putative TonB protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.706
sce9157
Probable tonb-dependent receptor signal peptide protein; Family membership.
  
     0.691
sce8263
tonB family protein; Family membership.
 
 
 0.662
tonB1
Putative TonB protein; Specificity unclear.
  
 
 0.659
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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