Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce4143Hypothetical protein; FOG: CBS domain. (274 aa)    
Predicted Functional Partners:
sce4584
Hypothetical protein predicted by Glimmer/Critica.
  
     0.522
sce7839
Hypothetical protein predicted by Glimmer/Critica.
  
     0.501
guaA1
GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP.
  
  
 0.489
sce4698
Hypothetical protein.
 
     0.488
sce1139
Hypothetical protein.
  
     0.457
purL
Phosphoribosylformylglycinamidine synthase,probable; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate.
     
 0.456
sce1857
Hypothetical protein predicted by Glimmer/Critica.
  
     0.437
sce1315
Hypothetical phosphotransferase; Family membership.
  
     0.434
sce8075
Hypothetical protein predicted by Glimmer/Critica.
  
     0.423
sce6837
Hypothetical protein.
  
     0.402
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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