Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce4158Transposase. (446 aa)    
Predicted Functional Partners:
sce4584
Hypothetical protein predicted by Glimmer/Critica.
  
     0.675
sce7168
Hypothetical protein.
  
     0.592
sce8075
Hypothetical protein predicted by Glimmer/Critica.
  
     0.550
sce1857
Hypothetical protein predicted by Glimmer/Critica.
  
     0.548
sce2003
Uncharacterized protein conserved in cyanobacteria.
  
     0.501
sce1139
Hypothetical protein.
  
     0.495
sce4159
Hypothetical protein predicted by Glimmer/Critica.
       0.464
sce8531
Hypothetical protein.
  
     0.460
sce0260
Uncharacterized protein conserved in cyanobacteria.
  
     0.453
sce4583
Hypothetical protein.
  
     0.423
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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