Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce4164Hypothetical protein; Acyl-CoA dehydrogenases. (417 aa)    
Predicted Functional Partners:
sce0048
enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase; Family membership; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.886
sce7555
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase; Family membership.
  
 0.886
sce0625
Electron transfer flavoprotein alpha-subunit; Family membership.
  
 
 0.735
sce4001
Hypothetical protein.
  
     0.718
sce0626
Putative electron transfer flavoprotein beta-subunit; Family membership.
  
 
 0.704
ribA2
GTP cyclohydrolase-2; Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate; Belongs to the GTP cyclohydrolase II family.
 
      0.701
sce1884
Hypothetical protein; Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases large terminal subunit.
  
     0.698
sce2024
Hydroxysteroid (17-beta) dehydrogenase 4.
 
 0.685
ribA3
GTP cyclohydrolase-2; Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate; Belongs to the GTP cyclohydrolase II family.
 
      0.629
sce0251
Unnamed protein product; Family membership.
  
 0.539
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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