STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce4168Hypothetical protein. (270 aa)    
Predicted Functional Partners:
sce6225
Hypothetical protein; No COG number.
 
     0.661
sce3052
Glycoside hydrolase family 2; Family membership; Belongs to the glycosyl hydrolase 2 family.
  
    0.655
sce8130
Selenocysteine lyase / isopenicillin N epimerase; Family membership.
  
     0.582
sce3055
Hypothetical protein with NDP-sugar oxidoreductase domain; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family.
  
     0.538
sce2387
Non-ribosomal peptide synthetase; Family membership.
  
  
 0.530
sce3053
Glycosyltransferase; Function unclear.
  
     0.522
sce6823
NRPS/PKS hybrid.
  
  
 0.509
sce7011
Hypothetical protein predicted by Glimmer/Critica.
  
     0.447
sodB
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
  
    0.419
sce0345
NRPS/PKS hybrid; Family membership.
  
  
 0.401
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.