STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce4195Putative Fe-S oxidoreductase; Family membership. (609 aa)    
Predicted Functional Partners:
sce4196
Beta-glucosidase; Belongs to the glycosyl hydrolase 1 family.
       0.693
sce6324
Sigma-54 dependent transcriptional regulator; Family membership.
  
  
 0.602
sce4194
DUF2470 domain-containing protein; Unnamed protein product; Specificity unclear.
       0.590
sce2057
Putative sphingosine kinase enzyme; High confidence in function and specificity.
  
     0.579
sce7057
Hypothetical protein.
  
  
 0.568
sce8936
Hypothetical protein; Fe-S oxidoreductase.
  
     0.565
sce1395
Hypothetical protein.
   
    0.558
sce1513
Hypothetical protein predicted by Glimmer/Critica.
  
  
 0.535
sce9085
Hypothetical protein.
  
     0.523
sce0208
Hypothetical protein predicted by Glimmer/Critica.
  
     0.521
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.