STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce4207Phosphomevalonate kinase. (336 aa)    
Predicted Functional Partners:
sce4206
Diphosphomevalonate decarboxylase; Family membership.
 
 
 0.999
mvk
Mvk protein; Mevalonate kinase.
 
  
  0.995
sce6394
Putative Hydroxymethylglutaryl-CoA synthase.
 
  
 0.836
sce4204
Geranyltranstransferase; Family membership; Belongs to the FPP/GGPP synthase family.
  
  
 0.822
sce3010
Putative 3-hydroxy-3-methylglutaryl-CoA reductase; Family membership; Belongs to the HMG-CoA reductase family.
 
 
 0.800
sce3181
Probable Hydroxymethylglutaryl-CoA synthase.
 
  
 0.722
idi
Isopentenyl-diphosphate delta-isomerase; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP).
 
   
 0.699
pheT
phenylalanyl-tRNA synthetase, beta subunit; Family membership; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
  
 
 0.509
sce4203
Hypothetical protein.
       0.479
sce0395
Putative outer membrane protein.
  
     0.451
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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