Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce4213Hypothetical carbohydrate-binding protein, Rhs family. (1383 aa)    
Predicted Functional Partners:
sce6981
Conserved carbohydrate-binding protein, Rhs family; Family membership.
  
     0.702
sce3022
Hypothetical protein.
  
    0.692
sce0703
Hypothetical protein.
  
    0.687
sce5929
Hypothetical protein.
  
     0.659
sce6980
Conserved carbohydrate-binding protein, Rhs family; Family membership.
  
     0.655
sce4991
FHA domain protein.
  
     0.654
sce7690
Hypothetical protein.
  
     0.643
sce4988
Uncharacterized protein conserved in bacteria.
  
    0.633
sce2836
Putative membrane protein.
  
     0.625
sce5207
Protein kinase; Family membership.
  
 
   0.620
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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