STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce4229Putative exonuclease; Family membership. (184 aa)    
Predicted Functional Partners:
sce5344
No similarity; Uncharacterized protein conserved in bacteria.
  
     0.662
sce8987
Hypothetical protein predicted by Glimmer/Critica.
  
     0.573
sce3364
Hypothetical protein; Family membership.
  
     0.557
sce8945
Hypothetical protein.
  
     0.510
sce5600
TROVE domain hypothetical protein.
  
     0.498
sce6902
polyA polymerase related protein; Family membership.
 
     0.476
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
  
 
 
 0.454
sce5185
Hypothetical protein; FOG: TPR repeat.
  
     0.435
sce1270
Hypothetical protein.
  
     0.419
sce0537
Hypothetical protein predicted by Glimmer/Critica.
  
     0.415
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.