STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce4240Glycosyltransferase; Function unclear. (450 aa)    
Predicted Functional Partners:
sce3584
Glycosyltransferase; Function unclear.
 
  
 0.742
wzc1
Protein kinase involved in polysaccharide biosynthesis; High confidence in function and specificity.
 
  
 0.712
topB
DNA topoisomerase III; High confidence in function and specificity.
    
 
 0.696
sce0882
Glycosyltransferase; Specificity unclear.
 
  
 0.679
sce4241
Glycosyltransferase; Function unclear.
 
    
0.607
sce4239
Hypothetical protein; No COG number.
       0.556
sce8957
Glycosyltransferase; Function unclear.
  
     0.552
sce7844
Putative capK; capsular polysaccharide biosynthesis protein.
 
    0.550
capK2
Putative capK related-protein.
  
     0.549
sce1030
Glycosyltransferase; Family membership.
  
     0.534
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.