STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce4259Hypothetical protein. (321 aa)    
Predicted Functional Partners:
galE4
GalE4 protein; High confidence in function and specificity.
  
  
 
0.923
rkpK
Hypothetical protein; Predicted UDP-glucose 6-dehydrogenase.
  
 0.919
sce6496
Epimerase domain-containing protein; Unnamed protein product; Family membership.
  
  
 
0.914
sce4260
Glycerol-3-phosphate acyltransferase.
 
    0.910
galE1
UDP-glucose 4-epimerase; High confidence in function and specificity; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
   
 0.907
glf
UDP-galactopyranose mutase; High confidence in function and specificity.
    
 0.905
sce3087
Hypothetical protein.
     
 0.901
galE2
GalE2 protein; High confidence in function and specificity.
     
  0.900
galE3
UDP-glucose 4-epimerase; High confidence in function and specificity.
     
  0.900
sce4868
Hexose-1-phosphate nucleotidyltransferase; High confidence in function and specificity.
  
 0.843
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.