Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce4260Glycerol-3-phosphate acyltransferase. (308 aa)    
Predicted Functional Partners:
sce4259
Hypothetical protein.
 
    0.910
galE4
GalE4 protein; High confidence in function and specificity.
 
    0.777
sce5953
Probable anion transporter ATPase; Function unclear.
  
     0.755
gspJ
Putative general secretion pathway protein J; Specificity unclear.
  
     0.703
sce8296
Probable Anion-transporting ATPase; Family membership.
  
     0.682
sce6496
Epimerase domain-containing protein; Unnamed protein product; Family membership.
 
    0.670
gspC2
General secretion pathway protein C fragment; Family membership.
  
     0.647
sce9314
Putative general secretion pathway protein C; Function unclear.
  
     0.631
sce8975
Hypothetical protein.
 
     0.593
gspC1
General secretion pathway protein C; Family membership.
  
     0.590
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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