STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce4262Hypothetical protein. (1779 aa)    
Predicted Functional Partners:
topB
DNA topoisomerase III; High confidence in function and specificity.
  
 0.980
sce0941
Calcineurin-like phosphoesterase family protein; Family membership.
  
 0.932
sce2632
Calcineurin-like phosphoesterase family protein; Family membership.
  
 0.932
sce3957
Putative cAMP phosphodiesterase.
  
 0.932
sce7166
DNA repair exonuclease family protein; Family membership.
  
 0.932
polA1
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 0.868
recQ
ATP-dependent DNA helicase RecQ; High confidence in function and specificity.
  
 0.844
sce2512
Hypothetical protein.
 
 
 0.816
sce5906
Putative exported glycine/glutamine-rich protein.
 
 
 0.806
trmA
RNA methyltransferase; Family membership; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
 
  
 0.802
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.