STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pilA2Fimbiral protein pilA; Specificity unclear. (203 aa)    
Predicted Functional Partners:
pilA1
Fimbrial protein pilA; Specificity unclear.
 
  
0.962
pilA3
Pilin; Specificity unclear.
 
  
 
0.956
gspJ
Putative general secretion pathway protein J; Specificity unclear.
  
 
 0.815
gspK
General secretion pathway protein K; Family membership.
  
 
 0.794
pulF
PulF protein; Type II secretory pathway component PulF.
  
  
 0.771
gspF
General secretion pathway protein F.
  
  
 0.771
pilD
Prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.728
sce8316
Competence protein.
  
  
 0.669
sce2471
Hypothetical protein predicted by Glimmer/Critica.
  
 
 0.662
pilB
Type IV pilus biogenesis protein PilB.
  
 
 0.662
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.